CDS

Accession Number TCMCG077C07449
gbkey CDS
Protein Id KAF5732705.1
Location complement(join(1387997..1388140,1388548..1388631,1389011..1389115,1389189..1389326,1389535..1389626,1390182..1390248,1391067..1391185,1392042..1392101,1393157..1393220,1393539..1393639,1393710..1393869))
Organism Tripterygium wilfordii
locus_tag HS088_TW17G00235

Protein

Length 377aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA542587, BioSample:SAMN11634134
db_source JAAARO010000017.1
Definition endonuclease III 1 chloroplastic isoform X1 [Tripterygium wilfordii]
Locus_tag HS088_TW17G00235

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGCCTCTCCTTCCCGCAGGCGCAGGGTGTTCGCATAGAATCCCATCATCAACGATTTCTGAATTAAGAAATTTTATCTACAAAATGCCCAAAACAAGATTCTCGTCAGCGCTTCGACTTCGATGCAAGTCTGAAGTTTCCAATTCAGACTCAGAACCACGCACTGATTCACTGAGTGGCGCTTCTACGCCCGAGATTCGGGTTTTCATGAGGAAGAAAAGAATAAAGAAAGAGTTCGAAGTTGGAACTGAACAGCCAAAACAATGTGGTCTACCAGACATTGAAGAATTTGCATATAGAAAAGCAAATGGATCTGTCAAGTCCAAACCCTCCACGAAGGTGCTTCCAGAGGGAGCTATAGTAGCTTCTGCTATGAAGAAAGCAGGGGAACCACCTGCAAACTGGGAAAGAGTACTTGAAGGCATTTGCAAAATGAGATCCTCTGAAGATGCACCAGTGGACTCTATGGGATGTGAGAAGGCTGGCAGTTCTCTTCCTCCCAAGGAAAGAAGATTTGCTGTGCTTGTTTCTTCACTTCTGTCGAGCCAAACCAAGGACAATGTAACTCATGGAGCAATCCAGCGCCTCCTGCAGAATGGCCTGCTTACACCTGATGCCATTATCAAAGCTGATGAAGCAACCATCAAAGGATTGATTTATCCGGTTGGATTTTATACAAGAAAGGCTGGTAATTTGAAGAAAATTGCTGAGATTTGCCTCAAAAAGTATGATGGAGATATACCTAACTCATTGGAGGATTTACTGTTACTTCCGGGTATAGGTCCTAAGATGGCTCATTTGGTAATGAATACGGGATGGAACAATGTTCAAGGGATATGTGTAGATACTCATGTGCATCGCATATGCAATCGGCTGGGATGGGTTTCCCGACGTGGCACAAAACAGAAAACTTTGACCCCTGAGGAAACTAGAGAGGCGTTGCAACTGTGGCTTCCGAAGGACGAATGGGCTCCAATTAACCCTCTTTTGGTTGGATTTGGACAGACAATTTGTACTCCGCTTAGACCTCGCTGTGGAATGTGTGGTGTGAATGAGTTCTGTCCATCTGCATTCAAGGATACCTCGAGCCCATCGGCCAAGCTCAAGAAGTCTGGTGTGAGCGAGAAGCTTTGA
Protein:  
MPLLPAGAGCSHRIPSSTISELRNFIYKMPKTRFSSALRLRCKSEVSNSDSEPRTDSLSGASTPEIRVFMRKKRIKKEFEVGTEQPKQCGLPDIEEFAYRKANGSVKSKPSTKVLPEGAIVASAMKKAGEPPANWERVLEGICKMRSSEDAPVDSMGCEKAGSSLPPKERRFAVLVSSLLSSQTKDNVTHGAIQRLLQNGLLTPDAIIKADEATIKGLIYPVGFYTRKAGNLKKIAEICLKKYDGDIPNSLEDLLLLPGIGPKMAHLVMNTGWNNVQGICVDTHVHRICNRLGWVSRRGTKQKTLTPEETREALQLWLPKDEWAPINPLLVGFGQTICTPLRPRCGMCGVNEFCPSAFKDTSSPSAKLKKSGVSEKL